Mercurial > hg > Members > aka > jupyter_CbC_kernel

annotate jupyter_c_kernel/kernel.py @ 52:0ef931211f77

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Added cflags and ldflags magics
author Ben Spoor <ben.spoor@altran.com>
date Wed, 12 Apr 2017 15:32:07 +0000
parents a98647258349
children 7857f8eea835
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1 from queue import Queue
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2 from threading import Thread
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3
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4 from ipykernel.kernelbase import Kernel
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5 import subprocess
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6 import tempfile
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7 import os
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8 import os.path as path
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9
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10
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11 class RealTimeSubprocess(subprocess.Popen):
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12 """
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13 A subprocess that allows to read its stdout and stderr in real time
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14 """
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15
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16 def __init__(self, cmd, write_to_stdout, write_to_stderr):
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17 """
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18 :param cmd: the command to execute
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19 :param write_to_stdout: a callable that will be called with chunks of data from stdout
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20 :param write_to_stderr: a callable that will be called with chunks of data from stderr
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21 """
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22 self._write_to_stdout = write_to_stdout
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23 self._write_to_stderr = write_to_stderr
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24
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25 super().__init__(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, bufsize=0)
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26
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27 self._stdout_queue = Queue()
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28 self._stdout_thread = Thread(target=RealTimeSubprocess._enqueue_output, args=(self.stdout, self._stdout_queue))
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29 self._stdout_thread.daemon = True
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30 self._stdout_thread.start()
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31
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32 self._stderr_queue = Queue()
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33 self._stderr_thread = Thread(target=RealTimeSubprocess._enqueue_output, args=(self.stderr, self._stderr_queue))
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34 self._stderr_thread.daemon = True
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35 self._stderr_thread.start()
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36
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37 @staticmethod
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38 def _enqueue_output(stream, queue):
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39 """
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40 Add chunks of data from a stream to a queue until the stream is empty.
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41 """
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42 for line in iter(lambda: stream.read(4096), b''):
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43 queue.put(line)
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44 stream.close()
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45
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46 def write_contents(self):
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47 """
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48 Write the available content from stdin and stderr where specified when the instance was created
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49 :return:
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50 """
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51
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52 def read_all_from_queue(queue):
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53 res = b''
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54 size = queue.qsize()
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55 while size != 0:
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56 res += queue.get_nowait()
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57 size -= 1
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58 return res
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60 stdout_contents = read_all_from_queue(self._stdout_queue)
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61 if stdout_contents:
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62 self._write_to_stdout(stdout_contents)
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63 stderr_contents = read_all_from_queue(self._stderr_queue)
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64 if stderr_contents:
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65 self._write_to_stderr(stderr_contents)
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67
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68 class CKernel(Kernel):
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69 implementation = 'jupyter_c_kernel'
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70 implementation_version = '1.0'
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71 language = 'c'
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72 language_version = 'C11'
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73 language_info = {'name': 'c',
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74 'mimetype': 'text/plain',
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75 'file_extension': '.c'}
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76 banner = "C kernel.\n" \
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77 "Uses gcc, compiles in C11, and creates source code files and executables in temporary folder.\n"
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79 def __init__(self, *args, **kwargs):
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80 super(CKernel, self).__init__(*args, **kwargs)
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81 self.files = []
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82 mastertemp = tempfile.mkstemp(suffix='.out')
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83 os.close(mastertemp[0])
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84 self.master_path = mastertemp[1]
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85 filepath = path.join(path.dirname(path.realpath(__file__)), '..', 'resources', 'master.c')
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86 subprocess.call(['gcc', filepath, '-std=c11', '-rdynamic', '-ldl', '-o', self.master_path])
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87
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88 def cleanup_files(self):
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89 """Remove all the temporary files created by the kernel"""
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90 for file in self.files:
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91 os.remove(file)
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92 os.remove(self.master_path)
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93
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94 def new_temp_file(self, **kwargs):
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95 """Create a new temp file to be deleted when the kernel shuts down"""
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96 # We don't want the file to be deleted when closed, but only when the kernel stops
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97 kwargs['delete'] = False
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98 kwargs['mode'] = 'w'
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99 file = tempfile.NamedTemporaryFile(**kwargs)
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100 self.files.append(file.name)
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101 return file
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102
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103 def _write_to_stdout(self, contents):
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104 self.send_response(self.iopub_socket, 'stream', {'name': 'stdout', 'text': contents})
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105
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106 def _write_to_stderr(self, contents):
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107 self.send_response(self.iopub_socket, 'stream', {'name': 'stderr', 'text': contents})
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108
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109 def create_jupyter_subprocess(self, cmd):
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110 return RealTimeSubprocess(cmd,
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111 lambda contents: self._write_to_stdout(contents.decode()),
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112 lambda contents: self._write_to_stderr(contents.decode()))
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113
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114 def compile_with_gcc(self, source_filename, binary_filename, cflags=None, ldflags=None):
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115 cflags = ['-std=c11', '-fPIC', '-shared', '-rdynamic'] + cflags
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116 args = ['gcc', source_filename] + cflags + ['-o', binary_filename] + ldflags
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117 return self.create_jupyter_subprocess(args)
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118
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119 def _filter_magics(self, code):
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120
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121 magics = {'cflags': [], 'ldflags': []}
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122
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123 for line in code.splitlines():
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124 if line.startswith('//%'):
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125 key, value = line[3:].split(":", 2)
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126 key = key.strip().lower()
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127
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128 if key in ['ldflags', 'cflags']:
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129 for flag in value.split():
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130 magics[key] += [flag]
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131
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132 return magics
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133
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134 def do_execute(self, code, silent, store_history=True,
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135 user_expressions=None, allow_stdin=False):
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136
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137 magics = self._filter_magics(code)
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138
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139 with self.new_temp_file(suffix='.c') as source_file:
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140 source_file.write(code)
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141 source_file.flush()
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142 with self.new_temp_file(suffix='.out') as binary_file:
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143 p = self.compile_with_gcc(source_file.name, binary_file.name, magics['cflags'], magics['ldflags'])
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144 while p.poll() is None:
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145 p.write_contents()
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146 p.write_contents()
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147 if p.returncode != 0: # Compilation failed
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148 self._write_to_stderr(
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149 "[C kernel] GCC exited with code {}, the executable will not be executed".format(
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150 p.returncode))
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151 return {'status': 'ok', 'execution_count': self.execution_count, 'payload': [],
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152 'user_expressions': {}}
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153
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8acbab5a9f21 Remove stream buffering on stdout & stderr
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154 p = self.create_jupyter_subprocess([self.master_path, binary_file.name])
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155 while p.poll() is None:
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156 p.write_contents()
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157 p.write_contents()
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158
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159 if p.returncode != 0:
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160 self._write_to_stderr("[C kernel] Executable exited with code {}".format(p.returncode))
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161 return {'status': 'ok', 'execution_count': self.execution_count, 'payload': [], 'user_expressions': {}}
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aa54c85303b6 Remove temporary files when shutting down the kernel
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162
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163 def do_shutdown(self, restart):
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164 """Cleanup the created source code files and executables when shutting down the kernel"""
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165 self.cleanup_files()